QIIME release (download)
Three sets of QIIME files are released, corresponding to the SHs resulting from clustering at the 3% distance (97% similarity) and 1% distance (99% similarity) threshold levels. The third set of files is the result of a dynamic use of clustering thresholds, such that some SHs are delimited at the 3% distance level, some at the 2.5% distance level, some at the 2% distance level, and so on; these choices were made manually by experts of those particular lineages of fungi. The syntax is the same throughout the three sets of files.
Each SH is given a stable name of the accession number type, here shown in the FASTA file of the dynamic set:
>SH099456.05FU_FJ357315_refs CACAATATGAAGGCGGGCTGGCACTCCTTGAGAGGACCGGC… SH099456 = accession number of the SH 05FU = global key release 5, organism group FUngi FJ357315 = GenBank/UNITE accession number of sequence chosen to represent the SH refs = this is a manually designated RefS (reps = this is an automatically chosen RepS)
In the corresponding text file, the classification string of the SH is found:
SH099456.05FU_FJ357315_refs k__Fungi;p__Ascomycota;c__Dothideomycetes;o__Pleosporales;f__Pleosporaceae;g__Embellisia;s__Embellisia_planifunda
This specifies the hierarchical classification of the sequence. k = kingdom; p = phylum ; c = class ; o = order ; f = family ; g = genus ; and s = species. Missing information is indicated as "unidentified" item; “f__unidentified;” means that no family name for the sequence exists.
UNITE follows the Index Fungorum classification in nearly all regards.
List of all QIIME releasesLink | Notes (changes to previous version) | ||||||
9.0 | 2023-07-18 | Fungi | 19 051 | 143 384 | Current | https://doi.org/10.15156/BIO/2938079 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE QIIME release for Fungi. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938079 Includes singletons set as RefS (in dynamic files). |
9.0 | 2023-07-18 | Fungi | 19 051 | 187 443 | Current | https://doi.org/10.15156/BIO/2938080 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE QIIME release for Fungi 2. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938080 Includes global and 3% distance singletons. |
9.0 | 2023-07-18 | All eukaryotes | 19 451 | 215 454 | Current | https://doi.org/10.15156/BIO/2938081 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE QIIME release for eukaryotes. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938081 Includes singletons set as RefS (in dynamic files). |
9.0 | 2023-07-18 | All eukaryotes | 19 451 | 307 276 | Current | https://doi.org/10.15156/BIO/2938082 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE QIIME release for eukaryotes 2. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938082 Includes global and 3% distance singletons. |
9.0 | 2022-10-16 | Fungi | 17 495 | 143 840 | https://doi.org/10.15156/BIO/2483915 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2022): UNITE QIIME release for Fungi. Version 16.10.2022. UNITE Community. https://doi.org/10.15156/BIO/2483915 Includes singletons set as RefS (in dynamic files). |
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9.0 | 2022-10-16 | Fungi | 17 495 | 188 070 | https://doi.org/10.15156/BIO/2483916 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2022): UNITE QIIME release for Fungi 2. Version 16.10.2022. UNITE Community. https://doi.org/10.15156/BIO/2483916 Includes global and 3% distance singletons. |
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9.0 | 2022-10-16 | All eukaryotes | 17 683 | 216 528 | https://doi.org/10.15156/BIO/2483917 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2022): UNITE QIIME release for eukaryotes. Version 16.10.2022. UNITE Community. https://doi.org/10.15156/BIO/2483917 Includes singletons set as RefS (in dynamic files). |
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9.0 | 2022-10-16 | All eukaryotes | 17 683 | 308 588 | https://doi.org/10.15156/BIO/2483918 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2022): UNITE QIIME release for eukaryotes 2. Version 16.10.2022. UNITE Community. https://doi.org/10.15156/BIO/2483918 Includes global and 3% distance singletons. |
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8.3 | 2021-05-10 | Fungi | 14 097 | 44 343 | https://doi.org/10.15156/BIO/1264708 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2021): UNITE QIIME release for Fungi. Version 10.05.2021. UNITE Community. https://doi.org/10.15156/BIO/1264708 Includes singletons set as RefS (in dynamic files). |
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8.3 | 2021-05-10 | Fungi | 14 097 | 83 993 | https://doi.org/10.15156/BIO/1264763 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2021): UNITE QIIME release for Fungi 2. Version 10.05.2021. UNITE Community. https://doi.org/10.15156/BIO/1264763 Includes global and 97% singletons. |
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8.3 | 2021-05-10 | All eukaryotes | 14 237 | 96 423 | https://doi.org/10.15156/BIO/1264819 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2021): UNITE QIIME release for eukaryotes. Version 10.05.2021. UNITE Community. https://doi.org/10.15156/BIO/1264819 Includes singletons set as RefS (in dynamic files). |
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8.3 | 2021-05-10 | All eukaryotes | 14 237 | 190 888 | https://doi.org/10.15156/BIO/1264861 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2021): UNITE QIIME release for eukaryotes 2. Version 10.05.2021. UNITE Community. https://doi.org/10.15156/BIO/1264861 Includes global and 97% singletons. |
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8.2 | 2020-02-20 | Fungi | 12 664 | 35 077 | https://doi.org/10.15156/BIO/786385 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2020): UNITE QIIME release for Fungi. Version 04.02.2020. UNITE Community. https://doi.org/10.15156/BIO/786385 Includes singletons set as RefS (in dynamic files). |
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8.2 | 2020-02-20 | Fungi | 12 664 | 71 723 | https://doi.org/10.15156/BIO/786387 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2020): UNITE QIIME release for Fungi 2. Version 04.02.2020. UNITE Community. https://doi.org/10.15156/BIO/786387 Includes global and 97% singletons. |
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8.2 | 2020-02-20 | All eukaryotes | 12 666 | 91 074 | https://doi.org/10.15156/BIO/786386 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2020): UNITE QIIME release for eukaryotes. Version 04.02.2020. UNITE Community. https://doi.org/10.15156/BIO/786386 Includes singletons set as RefS (in dynamic files). |
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8.2 | 2020-02-20 | All eukaryotes | 12 666 | 183 678 | https://doi.org/10.15156/BIO/786388 |
When using this resource, please cite it as follows: Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2020): UNITE QIIME release for eukaryotes 2. Version 04.02.2020. UNITE Community. https://doi.org/10.15156/BIO/786388 Includes global and 97% singletons. |
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8.0 | 2018-11-18 | Fungi | 9 407 | 26 260 | https://doi.org/10.15156/BIO/786334 |
When using this resource, please cite it as follows: UNITE Community (2019): UNITE QIIME release for Fungi. Version 18.11.2018. UNITE Community. https://doi.org/10.15156/BIO/786334 Includes singletons set as RefS (in dynamic files). |
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8.0 | 2018-11-18 | Fungi | 9 407 | 61 635 | https://doi.org/10.15156/BIO/786349 |
When using this resource, please cite it as follows: UNITE Community (2019): UNITE QIIME release for Fungi 2. Version 18.11.2018. UNITE Community. https://doi.org/10.15156/BIO/786349 Includes global and 97% singletons. |
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8.0 | 2018-11-18 | All eukaryotes | 9 409 | 54 013 | https://doi.org/10.15156/BIO/786335 |
When using this resource, please cite it as follows: UNITE Community (2019): UNITE QIIME release for eukaryotes. Version 18.11.2018. UNITE Community. https://doi.org/10.15156/BIO/786335 Includes singletons set as RefS (in dynamic files). |
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8.0 | 2018-11-18 | All eukaryotes | 9 409 | 112 778 | https://doi.org/10.15156/BIO/786350 |
When using this resource, please cite it as follows: UNITE Community (2019): UNITE QIIME release for eukaryotes 2. Version 18.11.2018. UNITE Community. https://doi.org/10.15156/BIO/786350 Includes global and 97% singletons. |
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7.2 | 2017-12-01 | 8 997 | 21 699 | https://doi.org/10.15156/BIO/587481 |
When using this resource, please cite it as follows: UNITE Community (2017): UNITE QIIME release. Version 01.12.2017. UNITE Community. https://doi.org/10.15156/BIO/587481 Includes singletons set as RefS (in dynamic files). |
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7.2 | 2017-12-01 | 8 997 | 49 052 | https://doi.org/10.15156/BIO/587481 |
When using this resource, please cite it as follows: UNITE Community (2017): UNITE QIIME release. Version 01.12.2017. UNITE Community. https://doi.org/10.15156/BIO/587481 Includes global and 97% singletons. |
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7.2 | 2017-10-10 | 8 756 | 21 793 | Download | Includes singletons set as RefS (in dynamic files). | ||
7.2 | 2017-10-10 | 8 756 | 49 160 | Download | Includes global and 97% singletons. | ||
7.2 | 2017-06-28 | 8 747 | 21 809 | Download | Includes singletons set as RefS (in dynamic files). | ||
7.2 | 2017-06-28 | 8 747 | 49 407 | Download | Includes global and 97% singletons. | ||
7.1 | 2016-11-20 | 8 180 | 21 163 | Download | Includes singletons set as RefS (in dynamic files). | ||
7.1 | 2016-11-20 | 8 180 | 46 389 | Download | Includes global and 97% singletons. | ||
7.1 | 2016-08-22 | 6 285 | 19 698 | Download | Includes singletons set as RefS (in dynamic files). | ||
7.1 | 2016-08-22 | 6 285 | 47 408 | Download | Includes global and 97% singletons. | ||
7.0 | 2016-01-31 | 6 273 | 16 991 | Download | |||
7.0 | 2016-01-31 | 6 273 | 37 020 | Download | |||
7.0 | 2015-08-01 | 5 925 | 16 849 | Download | |||
7.0 | 2015-08-01 | 5 925 | 36 878 | Download | |||
7.0 | 2015-03-02 | 4 384 | 17 730 | Download | |||
7.0 | 2015-03-02 | 4 384 | 37 921 | Download | |||
6.0 | 2014-12-30 | 4 431 | 16 759 | Download | |||
6.0 | 2014-12-30 | 4 431 | 41 231 | Download | |||
6.0 | 2014-09-10 | 4 403 | 16 782 | Download | |||
6.0 | 2014-09-10 | 4 403 | 41 271 | Download | |||
6.0 | 2014-07-04 | 3 973 | 17 084 | Download | |||
6.0 | 2014-07-04 | 3 973 | 41 596 | Download | |||
6.0 | 2014-05-13 | 3 245 | 17 643 | Download | |||
6.0 | 2014-05-13 | 3 245 | 42 454 | Download | |||
6.0 | 2014-02-09 | 3 059 | 17 816 | Download | |||
6.0 | 2014-02-09 | 3 059 | 43 072 | Download | |||
6.0 | 2014-01-15 | 3 032 | 17 840 | Download | Includes singletons set as RefS (in dynamic files). | ||
6.0 | 2014-01-15 | 3 032 | 43 098 | Download | Includes global and 97% singletons. | ||
6.0 | 2013-12-19 | 2 452 | 18 138 | Download | Default clustering threshold for dynamic files is 98.5%. Comprises all SHs with two or more sequences. | ||
6.0 | 2013-12-19 | 2 452 | 43 492 | Download | As above, but also comprises all global and 97% singletons. Default clustering threshold for dynamic files is 98.5% | ||
6.0 | 2013-12-08 | 2 441 | 15 325 | Download | |||
6.0 | 2013-12-08 | 2 441 | 40 679 | Download | Includes global and 97% singletons. | ||
5.0 | 2013-10-15 | 2 502 | 15 891 | Download | |||
5.0 | 2013-08-27 | 2 334 | 15 986 | Download | FASTA file format: >SH099456.05FU_FJ357315_refs CACAATATGAAGGCGGGCTGGCACTCCTTGAGAGGACCGGC… Taxonomy file format: >SH099456.05FU_FJ357315_refs k__Fungi; p__Ascomycota; c__Dothideomycetes; o__Pleosporales; f__Pleosporaceae; g__Embellisia; s__Embellisia_planifunda Missing information is indicated as a nullified item; “f__;” means that no family name for the sequence exists. |
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*Based on dynamic release |